Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2016Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: lmo:lmo2672 hypothetical protein. (279 aa)    
Predicted Functional Partners:
Ccel_2014
KEGG: cpy:Cphy_2209 hypothetical protein.
 
     0.826
Ccel_2672
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cdf:CD1725 AraC family transcription regulator.
  
     0.709
Ccel_2015
KEGG: cpy:Cphy_3137 hypothetical protein.
  
    0.577
Ccel_1181
Hypothetical protein; KEGG: cbl:CLK_2533 ABC transporter, permease protein.
  
     0.490
Ccel_3457
Signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region ATPase domain protein; KEGG: ckl:CKL_3318 two-component sensor histidine kinase.
  
    0.464
Ccel_2017
PFAM: lipolytic protein G-D-S-L family; cellulosome protein dockerin type I; KEGG: scl:sce3301 hypothetical protein.
       0.459
Ccel_3377
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cpy:Cphy_2411 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.454
Ccel_0508
Hypothetical protein; KEGG: cth:Cthe_1835 viral A-type inclusion repeat-containing protein.
  
     0.453
Ccel_1491
PFAM: type 3a cellulose-binding domain protein; Hyalin; KEGG: LOC587453; similar to hyalin.
  
     0.417
Ccel_2943
TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: cpy:Cphy_0798 toxin secretion/phage lysis holin.
  
     0.406
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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