STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2021PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 hypothetical protein. (463 aa)    
Predicted Functional Partners:
Ccel_2022
TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_0495 RNA polymerase, sigma 28 subunit.
 
    0.864
Ccel_0091
KEGG: cth:Cthe_2247 regulatory protein, MerR.
 
     0.746
Ccel_2279
PFAM: CheC domain protein; KEGG: cth:Cthe_0126 CheC-like protein.
  
     0.730
Ccel_2025
PFAM: CheC domain protein; KEGG: cth:Cthe_0492 CheC, inhibitor of MCP methylation.
 
    0.728
Ccel_0158
PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 hypothetical protein.
  
     0.698
Ccel_2039
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cth:Cthe_0477 flagellar motor switch protein FliM.
 
     0.692
Ccel_2049
PFAM: flagellar assembly protein FliH; KEGG: cth:Cthe_0467 flagellar biosynthesis/type III secretory pathway protein-like protein.
 
     0.679
Ccel_2030
PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: cth:Cthe_0486 GTP-binding signal recognition particle.
 
   
 0.676
Ccel_0093
PFAM: FlgN family protein; KEGG: cth:Cthe_2245 hypothetical protein.
 
     0.670
Ccel_2045
PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein.
 
   
 0.667
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.