Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_2046KEGG: cth:Cthe_0470 hypothetical protein. (289 aa)    
Predicted Functional Partners:
Ccel_2045
PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein.
 
  
 0.990
Ccel_2047
TIGRFAM: flagellar export protein FliJ; PFAM: flagellar FliJ protein; KEGG: cth:Cthe_0469 flagellar export protein FliJ.
 
  
 0.988
Ccel_2049
PFAM: flagellar assembly protein FliH; KEGG: cth:Cthe_0467 flagellar biosynthesis/type III secretory pathway protein-like protein.
 
    0.979
Ccel_2038
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 flagellar motor switch protein.
 
  
 0.978
Ccel_2044
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.977
Ccel_2051
TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: cth:Cthe_0465 flagellar M-ring protein FliF.
 
  
 0.977
Ccel_2050
TIGRFAM: flagellar motor switch protein FliG; KEGG: cth:Cthe_0466 flagellar motor switch protein G.
  
  
 0.971
Ccel_2048
ATPase FliI/YscN; KEGG: cth:Cthe_0468 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase.
  
    0.966
Ccel_2042
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: cth:Cthe_0474 protein of unknown function DUF1078-like protein.
  
  
 0.948
Ccel_2053
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC.
  
  
 0.945
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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