Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2115PFAM: extracellular solute-binding protein family 1; KEGG: csc:Csac_0682 extracellular solute-binding protein. (432 aa)    
Predicted Functional Partners:
Ccel_2113
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: csc:Csac_0684 response regulator receiver protein.
 
     0.825
Ccel_0998
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_3409 extracellular solute-binding protein.
  
     0.746
Ccel_1026
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_4679 binding-protein-dependent transport systems inner membrane component.
 
 
 0.739
Ccel_0201
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB0775 sugar ABC transporter permease.
 
 
 0.737
Ccel_1134
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_4679 binding-protein-dependent transport systems inner membrane component.
 
 
 0.730
Ccel_2114
Putative sensor with HAMP domain; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: csc:Csac_0683 histidine kinase internal region.
 
   
 0.726
Ccel_2111
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3214 sugar ABC transporter permease.
 
 
 0.718
Ccel_2909
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
 
 
 0.710
Ccel_2996
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llc:LACR_1477 ABC-type sugar transport system, permease component.
 
 
 0.706
Ccel_2112
PFAM: extracellular solute-binding protein family 1; KEGG: ace:Acel_0130 extracellular solute-binding protein, family 1.
 
   
 0.685
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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