Ccel_2118 protein (Ruminiclostridium cellulolyticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

Ccel_2118

PFAM: protein of unknown function DUF47; KEGG: ckl:CKL_1353 pit accessory protein. (207 aa)

Predicted Functional Partners:

Ccel_2117

0.993

Ccel_2105

0.439

uvrA

0.415

Ccel_2116

0.404

Your Current Organism:

Ruminiclostridium cellulolyticum

NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccel_2105	Ccel_2118	Ccel_2105	Ccel_2118	Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.	PFAM: protein of unknown function DUF47; KEGG: ckl:CKL_1353 pit accessory protein.	0.439
Ccel_2116	Ccel_2117	Ccel_2116	Ccel_2117	PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_0312 ATPase AAA-2; Belongs to the ClpA/ClpB family.	PFAM: phosphate transporter; KEGG: csc:Csac_2032 phosphate transporter.	0.424
Ccel_2116	Ccel_2118	Ccel_2116	Ccel_2118	PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_0312 ATPase AAA-2; Belongs to the ClpA/ClpB family.	PFAM: protein of unknown function DUF47; KEGG: ckl:CKL_1353 pit accessory protein.	0.404
Ccel_2116	uvrA	Ccel_2116	Ccel_2119	PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_0312 ATPase AAA-2; Belongs to the ClpA/ClpB family.	Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.	0.439
Ccel_2117	Ccel_2116	Ccel_2117	Ccel_2116	PFAM: phosphate transporter; KEGG: csc:Csac_2032 phosphate transporter.	PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_0312 ATPase AAA-2; Belongs to the ClpA/ClpB family.	0.424
Ccel_2117	Ccel_2118	Ccel_2117	Ccel_2118	PFAM: phosphate transporter; KEGG: csc:Csac_2032 phosphate transporter.	PFAM: protein of unknown function DUF47; KEGG: ckl:CKL_1353 pit accessory protein.	0.993
Ccel_2117	uvrA	Ccel_2117	Ccel_2119	PFAM: phosphate transporter; KEGG: csc:Csac_2032 phosphate transporter.	Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.	0.427
Ccel_2118	Ccel_2105	Ccel_2118	Ccel_2105	PFAM: protein of unknown function DUF47; KEGG: ckl:CKL_1353 pit accessory protein.	Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.	0.439
Ccel_2118	Ccel_2116	Ccel_2118	Ccel_2116	PFAM: protein of unknown function DUF47; KEGG: ckl:CKL_1353 pit accessory protein.	PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_0312 ATPase AAA-2; Belongs to the ClpA/ClpB family.	0.404
Ccel_2118	Ccel_2117	Ccel_2118	Ccel_2117	PFAM: protein of unknown function DUF47; KEGG: ckl:CKL_1353 pit accessory protein.	PFAM: phosphate transporter; KEGG: csc:Csac_2032 phosphate transporter.	0.993
Ccel_2118	uvrA	Ccel_2118	Ccel_2119	PFAM: protein of unknown function DUF47; KEGG: ckl:CKL_1353 pit accessory protein.	Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.	0.415
uvrA	Ccel_2116	Ccel_2119	Ccel_2116	Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.	PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_0312 ATPase AAA-2; Belongs to the ClpA/ClpB family.	0.439
uvrA	Ccel_2117	Ccel_2119	Ccel_2117	Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.	PFAM: phosphate transporter; KEGG: csc:Csac_2032 phosphate transporter.	0.427
uvrA	Ccel_2118	Ccel_2119	Ccel_2118	Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.	PFAM: protein of unknown function DUF47; KEGG: ckl:CKL_1353 pit accessory protein.	0.415