Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2127PFAM: Accessory gene regulator B; KEGG: cth:Cthe_1310 accessory gene regulator B. (194 aa)    
Predicted Functional Partners:
Ccel_0955
PFAM: Accessory gene regulator B; KEGG: cth:Cthe_2358 accessory gene regulator B.
  
  
  0.947
Ccel_2798
PFAM: Accessory gene regulator B; KEGG: cth:Cthe_2358 accessory gene regulator B.
  
  
  0.944
Ccel_3455
PFAM: Accessory gene regulator B; KEGG: ckl:CKL_3367 AgrB-like protein.
     
  0.900
Ccel_0092
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: cth:Cthe_2246 anti-sigma-28 factor, FlgM.
  
     0.533
Ccel_0505
Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein.
  
     0.516
Ccel_2928
KEGG: cth:Cthe_2695 hypothetical protein.
  
     0.512
Ccel_0079
KEGG: cth:Cthe_2259 hypothetical protein.
  
     0.484
Ccel_2125
KEGG: cth:Cthe_1311 signal transduction histidine kinase regulating citrate/malate metabolism.
 
     0.452
Ccel_1692
PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_0772 peptidoglycan-binding LysM.
  
     0.440
Ccel_0301
KEGG: cth:Cthe_2712 hypothetical protein.
  
     0.438
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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