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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2157Hypothetical protein; KEGG: afl:Aflv_1572 ABC-type multidrug transport system, permease component. (264 aa)    
Predicted Functional Partners:
Ccel_2159
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: afl:Aflv_1573 ABC-type multidrug transport system, ATPase component.
 
 
 0.968
Ccel_2158
KEGG: tle:Tlet_1861 putative ABC-2 type transport system permease protein.
 
    
0.792
Ccel_3262
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD1604 ABC transporter, ATP-binding protein.
 
 
 0.586
Ccel_1917
KEGG: cdf:CD1619 putative ABC transporter, peremase protein.
 
 
 0.574
Ccel_0223
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: blj:BLD_0790 ABC-type multidrug transport system ATPase component.
  
 
 0.533
Ccel_0295
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_2706 ABC transporter related protein.
  
 
 0.533
Ccel_0966
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfu:PF1011 daunorubicin resistance ATP-binding protein DrrA.
  
 
 0.533
Ccel_2605
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1324 ABC transporter related.
  
 
 0.533
Ccel_2608
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_0186 ABC transporter related.
  
 
 0.533
Ccel_0195
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_3008 ABC transporter related.
  
 
 0.525
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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