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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2162PFAM: lipolytic protein G-D-S-L family; cellulosome protein dockerin type I; KEGG: cac:CAC0537 acetylxylan esterase. (436 aa)    
Predicted Functional Partners:
Ccel_2392
PFAM: glycoside hydrolase family 9; cellulosome protein dockerin type I; Carbohydrate-binding CenC domain protein; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: cac:CAC0561 cellulase CelE-like protein.
  
 
 0.747
Ccel_1551
PFAM: glycoside hydrolase family 26; cellulosome protein dockerin type I; KEGG: cth:Cthe_0032 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.728
celCCD
Glycoside hydrolase family 5; The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.
 
   
 0.649
Ccel_1229
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: cth:Cthe_1271 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 43 family.
  
     0.645
Ccel_2226
PFAM: glycoside hydrolase family 9; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: sus:Acid_2606 cellulase.
  
 
 0.626
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
  
 
   0.617
Ccel_2823
TIGRFAM: phage minor structural protein; KEGG: hmo:HM1_2971 phage minor structural protein, N-terminal.
  
   0.617
celCCC
Glycoside hydrolase family 8; The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.
 
     0.540
acpS
Holo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
  
    0.534
Ccel_2621
PFAM: glycoside hydrolase family 9; cellulosome protein dockerin type I; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: cth:Cthe_0624 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
  
 0.523
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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