Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2169KEGG: cth:Cthe_3163 carbohydrate-binding family 25 protein. (121 aa)    
Predicted Functional Partners:
Ccel_1460
PFAM: tryptophan RNA-binding attenuator protein; KEGG: cth:Cthe_1263 transcription attenuation protein MtrB.
  
     0.718
Ccel_1698
KEGG: cth:Cthe_0778 hypothetical protein; Belongs to the UPF0342 family.
  
     0.705
Ccel_1773
PFAM: glycosyl transferase group 1; KEGG: cth:Cthe_1303 glycosyl transferase, group 1.
  
     0.686
Ccel_1731
KEGG: cth:Cthe_0710 hypothetical protein.
  
     0.671
Ccel_2798
PFAM: Accessory gene regulator B; KEGG: cth:Cthe_2358 accessory gene regulator B.
  
     0.627
Ccel_0955
PFAM: Accessory gene regulator B; KEGG: cth:Cthe_2358 accessory gene regulator B.
  
     0.616
Ccel_0549
PFAM: NADPH-dependent FMN reductase; KEGG: cth:Cthe_0870 NADPH-dependent FMN reductase.
  
     0.585
Ccel_2916
PFAM: GCN5-related N-acetyltransferase; KEGG: cth:Cthe_1870 GCN5-related N-acetyltransferase.
  
     0.569
Ccel_0335
PFAM: glycoside hydrolase 15-related; KEGG: cth:Cthe_1787 glycoside hydrolase 15-related.
  
   
 0.539
Ccel_0277
PFAM: Fibronectin type III domain protein; KEGG: cth:Cthe_2612 fibronectin, type III.
  
     0.537
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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