Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2188PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: cpy:Cphy_1886 peptidoglycan binding domain-containing protein. (549 aa)    
Predicted Functional Partners:
Ccel_0747
PFAM: NLP/P60 protein; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: csc:Csac_1052 NLP/P60 protein.
 
  
0.589
Ccel_1338
PFAM: Peptidoglycan-binding LysM; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0635 protein serine/threonine phosphatases.
 
 
 0.561
Ccel_1514
TIGRFAM: phage tail protein; KEGG: npu:Npun_F1414 phage tail protein.
 
   0.544
Ccel_0033
PFAM: NLP/P60 protein; SH3 type 3 domain protein; KEGG: cth:Cthe_2413 NLP/P60.
 
   
 0.533
Ccel_2906
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.511
Ccel_1535
PFAM: tyrosine protein kinase; PASTA domain containing protein; Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: cth:Cthe_0574 serine/threonine protein kinase.
 
   
 0.507
Ccel_0390
Hypothetical protein; KEGG: csc:Csac_0946 TPR repeat-containing protein.
 
 
   0.494
Ccel_0417
PFAM: cellulosome protein dockerin type I; KEGG: cth:Cthe_0246 carbohydrate-binding family 6 protein.
  
    0.493
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.486
Ccel_0478
PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cth:Cthe_0979 peptidoglycan glycosyltransferase.
     
 0.461
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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