Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2189PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: amt:Amet_0590 alcohol dehydrogenase. (346 aa)    
Predicted Functional Partners:
Ccel_0954
PFAM: PfkB domain protein; KEGG: tpd:Teth39_0632 ribokinase-like domain-containing protein.
 
 
 0.921
Ccel_3221
PFAM: hexokinase; KEGG: hmo:HM1_0763 hexokinase, putative.
  
 
 0.919
xylA
TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: cdf:CD3064 xylose isomerase; Belongs to the xylose isomerase family.
     
 0.903
Ccel_2190
PFAM: ROK family protein; KEGG: cbt:CLH_2695 ROK family protein.
 
  
 0.629
Ccel_1009
PFAM: aldo/keto reductase; KEGG: sus:Acid_2860 aldehyde reductase.
 
 
 0.483
Ccel_1164
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase.
     
 0.434
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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