Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ccel_2191KEGG: ssa:SSA_1346 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Ccel_1519
KEGG: predicted protein.
  
     0.739
Ccel_2502
KEGG: cbe:Cbei_0745 hypothetical protein.
  
     0.738
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.734
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
     0.729
Ccel_2442
PFAM: cellulosome protein dockerin type I; KEGG: gvi:gll3705 unknown protein.
  
     0.694
Ccel_1491
PFAM: type 3a cellulose-binding domain protein; Hyalin; KEGG: LOC587453; similar to hyalin.
  
     0.686
Ccel_1937
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0243 copper amine oxidase-like protein.
  
     0.665
Ccel_0736
PFAM: cellulosome protein dockerin type I; KEGG: cac:CAC0918 non-processive endoglucanase.
  
     0.661
Ccel_0948
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_3240 extracellular solute-binding protein.
  
     0.644
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
     
 0.641
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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