Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2192PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ava:Ava_B0286 exonuclease. (186 aa)    
Predicted Functional Partners:
Ccel_2193
KEGG: cbh:CLC_1041 hypothetical protein.
       0.773
Ccel_2194
PFAM: transcriptional regulator PadR family protein; KEGG: cth:Cthe_1491 PadR family transcriptional regulator.
       0.732
Ccel_0108
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: LOC100082187; similar to kelch-like 5 (Drosophila); K10442 kelch-like protein 1/4/5.
  
     0.577
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 
 0.520
Ccel_2195
Hypothetical protein; KEGG: pdi:BDI_2325 RNA polymerase ECF-type sigma factor.
       0.485
Ccel_1097
Kelch repeat-containing protein; PFAM: PKD domain containing protein; NHL repeat containing protein; Fibronectin type III domain protein; Kelch repeat-containing protein; Two component regulator propeller; Kelch repeat protein; KEGG: csc:Csac_0278 hypothetical protein.
  
     0.461
Ccel_1237
Carbohydrate binding family 6; PFAM: glycoside hydrolase clan GH-D; cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cak:Caul_2129 alpha-galactosidase.
  
     0.430
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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