Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2194PFAM: transcriptional regulator PadR family protein; KEGG: cth:Cthe_1491 PadR family transcriptional regulator. (106 aa)    
Predicted Functional Partners:
Ccel_2193
KEGG: cbh:CLC_1041 hypothetical protein.
 
     0.933
Ccel_2192
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ava:Ava_B0286 exonuclease.
       0.732
Ccel_1176
KEGG: cdf:CD1088 hypothetical protein.
 
     0.655
Ccel_2195
Hypothetical protein; KEGG: pdi:BDI_2325 RNA polymerase ECF-type sigma factor.
       0.509
Ccel_2196
KEGG: cth:Cthe_3222 hypothetical protein.
 
     0.452
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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