Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2212KEGG: ckl:CKL_2814 hypothetical protein. (348 aa)    
Predicted Functional Partners:
Ccel_2213
KEGG: ckl:CKL_2815 hypothetical protein.
 
  
 0.948
Ccel_0239
Hypothetical protein; KEGG: LOC100083241; similar to vitellogenin.
  
     0.747
Ccel_1937
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0243 copper amine oxidase-like protein.
  
     0.694
Ccel_2442
PFAM: cellulosome protein dockerin type I; KEGG: gvi:gll3705 unknown protein.
  
     0.691
Ccel_1519
KEGG: predicted protein.
  
     0.664
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
     0.654
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.652
Ccel_1718
PFAM: copper amine oxidase domain protein; KEGG: cpo:COPRO5265_1378 putative branched chain amino acid ABC transporter substrate-binding protein.
  
    0.652
Ccel_2502
KEGG: cbe:Cbei_0745 hypothetical protein.
  
     0.648
Ccel_2298
PFAM: transposase IS605 OrfB; KEGG: tma:TM1831 transposase, putative.
  
     0.634
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.