Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2219KEGG: cth:Cthe_0353 hypothetical protein. (371 aa)    
Predicted Functional Partners:
Ccel_2218
TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cth:Cthe_0354 putative CoA-substrate-specific enzyme activase.
   
 0.963
Ccel_2220
KEGG: cth:Cthe_0352 hypothetical protein.
   
0.940
Ccel_1853
KEGG: tpd:Teth39_0898 hypothetical protein.
  
     0.613
Ccel_2221
PFAM: cell wall hydrolase/autolysin; protein of unknown function DUF187; KEGG: bce:BC2392 FenI.
       0.576
Ccel_2085
KEGG: cth:Cthe_3174 hypothetical protein.
  
     0.515
Ccel_3340
TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein.
  
     0.510
Ccel_1945
TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA protein activase; KEGG: cth:Cthe_1329 putative CoA-substrate-specific enzyme activase.
 
   
0.480
Ccel_2561
TIGRFAM: rod shape-determining protein MreD; KEGG: cth:Cthe_0090 hypothetical protein.
  
     0.476
Ccel_1461
KEGG: cth:Cthe_1262 hypothetical protein.
  
     0.471
Ccel_2925
Putative transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: aoe:Clos_2274 CopG family transcriptional regulator.
  
     0.470
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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