STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2221PFAM: cell wall hydrolase/autolysin; protein of unknown function DUF187; KEGG: bce:BC2392 FenI. (997 aa)    
Predicted Functional Partners:
Ccel_2218
TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cth:Cthe_0354 putative CoA-substrate-specific enzyme activase.
       0.576
Ccel_2219
KEGG: cth:Cthe_0353 hypothetical protein.
       0.576
Ccel_2220
KEGG: cth:Cthe_0352 hypothetical protein.
       0.576
cinA
Competence/damage-inducible protein CinA; TIGRFAM: molybdenum cofactor synthesis domain protein; competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cth:Cthe_1052 competence/damage-inducible protein CinA.
 
     0.573
Ccel_0172
KEGG: cth:Cthe_2091 hypothetical protein.
 
 
 0.530
Ccel_1860
PFAM: Rhomboid family protein; KEGG: cth:Cthe_1048 rhomboid family protein.
  
   0.528
Ccel_2442
PFAM: cellulosome protein dockerin type I; KEGG: gvi:gll3705 unknown protein.
  
     0.518
Ccel_0227
KEGG: csc:Csac_0468 hypothetical protein.
    
   0.502
Ccel_0649
PFAM: cellulosome protein dockerin type I; KEGG: cac:CA_P0119 xylan degradation protein.
  
   
 0.476
Ccel_3098
KEGG: cth:Cthe_2623 exopolysaccharide biosynthesis protein.
 
     0.468
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.