Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2230KEGG: cpy:Cphy_0280 hypothetical protein. (156 aa)    
Predicted Functional Partners:
Ccel_2229
KEGG: cbe:Cbei_4038 hypothetical protein.
 
   
 0.946
Ccel_2671
KEGG: dsy:DSY0048 hypothetical protein.
  
     0.735
Ccel_3235
KEGG: dsy:DSY4338 hypothetical protein.
  
     0.603
Ccel_2638
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; transcription activator effector binding; KEGG: cbb:CLD_2330 MerR family transcriptional regulator.
  
     0.556
Ccel_0232
KEGG: bat:BAS1604 hypothetical protein.
  
     0.459
Ccel_2739
KEGG: cdf:CD3213 hypothetical protein.
  
     0.452
Ccel_0319
KEGG: cbo:CBO0408 hypothetical protein.
  
     0.447
Ccel_1050
KEGG: cdf:CD0455 hypothetical protein.
  
     0.446
Ccel_2418
KEGG: cdf:CD0277 hypothetical protein.
  
     0.444
Ccel_2228
PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: bce:BC1813 carboxylic ester hydrolase.
       0.443
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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