Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2234Ferredoxin; KEGG: cth:Cthe_0340 ferredoxin. (123 aa)    
Predicted Functional Partners:
Ccel_2232
TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cth:Cthe_0342 hydrogenase, Fe-only.
 
 
 0.983
Ccel_2235
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: cth:Cthe_0339 histidine kinase.
 
   
 0.966
Ccel_2467
TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cth:Cthe_0342 hydrogenase, Fe-only.
 
 
 0.957
Ccel_2236
TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E subunit.
 
 
 0.943
Ccel_2233
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cth:Cthe_0341 NADH dehydrogenase (quinone).
 
   
 0.866
Ccel_1436
KEGG: cth:Cthe_0336 DRTGG domain-containing protein.
 
   
 0.830
Ccel_2301
KEGG: cbl:CLK_1211 hypothetical protein.
 
 
 0.810
Ccel_2300
KEGG: cpy:Cphy_0092 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; SMART: PAS domain containing protein.
 
 
 
 0.793
Ccel_2545
TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cth:Cthe_0372 sulfide dehydrogenase (flavoprotein) subunit SudA.
   
 
 0.715
Ccel_2305
PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: aoe:Clos_0988 NADH dehydrogenase (ubiquinone) 24 kDa subunit.
 
 
 0.687
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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