Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2240PFAM: protein of unknown function DUF965; KEGG: cth:Cthe_0151 hypothetical protein; Belongs to the UPF0297 family. (88 aa)    
Predicted Functional Partners:
Ccel_2239
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
    0.943
Ccel_0708
Putative helix-turn-helix protein YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
   
 0.738
Ccel_3354
PFAM: protein of unknown function DUF951; KEGG: cth:Cthe_2512 hypothetical protein.
  
     0.737
Ccel_0543
PFAM: protein of unknown function DUF633; KEGG: cth:Cthe_0893 hypothetical protein.
  
     0.733
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.647
Ccel_2241
RNA modification enzyme, MiaB family; KEGG: cth:Cthe_0150 RNA modification protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB.
       0.609
Ccel_1964
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein.
  
     0.573
Ccel_2939
TIGRFAM: stage V sporulation protein B; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cth:Cthe_2688 polysaccharide biosynthesis protein.
  
     0.569
Ccel_2238
PFAM: protein of unknown function DUF1292; KEGG: cth:Cthe_0154 hypothetical protein.
  
  
 0.567
Ccel_0455
PFAM: protein of unknown function DUF448; KEGG: cth:Cthe_0993 hypothetical protein.
  
   
 0.565
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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