Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2243PFAM: Pectate lyase/Amb allergen; cellulosome protein dockerin type I; KEGG: cth:Cthe_2179 pectate lyase/Amb allergen. (462 aa)    
Predicted Functional Partners:
Ccel_1246
PFAM: Pectinesterase; cellulosome protein dockerin type I; KEGG: cth:Cthe_2949 pectinesterase.
 
 0.981
Ccel_0750
PFAM: glycoside hydrolase family 11; cellulosome protein dockerin type I; KEGG: cth:Cthe_2972 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.777
Ccel_1866
PFAM: glycoside hydrolase family 11; KEGG: cpy:Cphy_2105 endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.769
Ccel_1235
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: cth:Cthe_2196 carbohydrate-binding family 6 protein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.755
Ccel_2123
PFAM: cellulosome protein dockerin type I; glycosyl hydrolase 53 domain protein; KEGG: cth:Cthe_1400 glycosyl hydrolase 53.
  
   
 0.734
Ccel_1656
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; Parallel beta-helix repeat; KEGG: cth:Cthe_2195 carbohydrate-binding family 6 protein.
  
   
 0.713
Ccel_1972
PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_0661 ricin B lectin; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.700
Ccel_2621
PFAM: glycoside hydrolase family 9; cellulosome protein dockerin type I; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: cth:Cthe_0624 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
  
 0.697
man26A
PFAM: glycoside hydrolase family 26; cellulosome protein dockerin type I; KEGG: cth:Cthe_2811 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.636
cel9P
PFAM: glycoside hydrolase family 9; cellulosome protein dockerin type I; KEGG: cth:Cthe_0433 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
   
 0.586
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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