Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2245KEGG: cth:Cthe_0149 HPrNtr domain-containing protein. (75 aa)    
Predicted Functional Partners:
Ccel_0806
TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: cth:Cthe_2735 HPrNtr domain-containing protein.
  
  
 0.919
Ccel_2908
Transcriptional regulator, CdaR; PFAM: helix-turn-helix Fis-type; KEGG: cth:Cthe_1861 CdaR family transcriptional regulator.
  
     0.745
Ccel_0393
KEGG: tte:TTE1989 hypothetical protein.
  
     0.723
tpiA
Phosphoglycerate kinase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
  
  
 0.669
Ccel_2566
PFAM: Negative regulator of genetic competence; KEGG: cth:Cthe_0085 negative regulator of genetic competence.
  
     0.655
Ccel_2569
TIGRFAM: pyruvate kinase; PFAM: PEP-utilising protein mobile region; Pyruvate kinase barrel; Pyruvate kinase alpha/beta; KEGG: csc:Csac_1831 pyruvate kinase; Belongs to the pyruvate kinase family.
  
  
 0.642
Ccel_0484
PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cth:Cthe_3176 small acid-soluble spore protein, alpha/beta type.
  
     0.602
Ccel_1448
KEGG: cth:Cthe_1383 tetratricopeptide TPR_2.
  
    0.576
Ccel_1005
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: csc:Csac_1338 alanine racemase.
   
 
 0.538
Ccel_1438
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mta:Moth_2024 LacI family transcription regulator.
   
 
 0.538
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.