Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2248KEGG: ctc:CTC01950 hypothetical protein. (490 aa)    
Predicted Functional Partners:
Ccel_2249
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ctc:CTC01951 alkaline phosphatase synthesis sensor protein PhoR.
 
     0.942
Ccel_2250
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbf:CLI_0424 DNA-binding response regulator.
 
     0.829
Ccel_2251
PFAM: polysaccharide deacetylase; KEGG: cpy:Cphy_3069 polysaccharide deacetylase.
       0.741
Ccel_1150
Plasmid maintenance system antidote protein, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cth:Cthe_0049 XRE family transcriptional regulator.
  
     0.723
Ccel_2502
KEGG: cbe:Cbei_0745 hypothetical protein.
  
     0.593
Ccel_0371
PFAM: sulfatase; KEGG: cac:CAC2802 phosphoglycerol transferase.
  
    0.571
Ccel_1381
KEGG: aoe:Clos_1044 hypothetical protein.
  
     0.566
Ccel_2298
PFAM: transposase IS605 OrfB; KEGG: tma:TM1831 transposase, putative.
  
     0.535
Ccel_0239
Hypothetical protein; KEGG: LOC100083241; similar to vitellogenin.
  
     0.528
Ccel_2515
KEGG: plu:plu2412 hypothetical protein.
  
     0.521
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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