STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2251PFAM: polysaccharide deacetylase; KEGG: cpy:Cphy_3069 polysaccharide deacetylase. (291 aa)    
Predicted Functional Partners:
Ccel_2248
KEGG: ctc:CTC01950 hypothetical protein.
       0.737
Ccel_2249
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ctc:CTC01951 alkaline phosphatase synthesis sensor protein PhoR.
       0.737
Ccel_2250
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbf:CLI_0424 DNA-binding response regulator.
       0.737
Ccel_1988
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: cpo:COPRO5265_0045 chitin synthase.
 
  
 0.697
Ccel_1866
PFAM: glycoside hydrolase family 11; KEGG: cpy:Cphy_2105 endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
      0.593
Ccel_2252
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cth:Cthe_0145 metal dependent phosphohydrolase.
       0.503
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.483
Ccel_2246
PFAM: protein of unknown function DUF523; KEGG: ckl:CKL_3182 hypothetical protein.
       0.477
Ccel_0333
PFAM: glycosyl transferase family 2; KEGG: cth:Cthe_1788 glycosyl transferase family protein.
  
  
 0.417
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.