Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_2265KEGG: amt:Amet_1032 ABC-type bacteriocin transporter; TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase. (727 aa)    
Predicted Functional Partners:
Ccel_2264
Hypothetical protein; KEGG: cbl:CLK_3683 putative bacteriocin ABC transporter, bacteriocin-binding protein.
 
 
 0.986
Ccel_0468
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cth:Cthe_1762 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.747
Ccel_2917
KEGG: sth:STH1943 hypothetical protein.
  
  
 0.714
Ccel_2263
KEGG: viral A-type inclusion protein, putative.
       0.645
Ccel_0343
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC1558 ABC-type transport system,membrane ATPase component.
 
 
  
0.522
Ccel_1430
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: efa:EF1593 ABC transporter, ATP-binding/permease protein.
 
 
  
0.483
Ccel_1386
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3299 ABC transporter related.
 
 
  
0.478
Ccel_1429
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: lin:lin0156 hypothetical protein.
 
 
  
0.476
Ccel_0583
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_2144 ABC transporter related.
 
 
  
0.470
Ccel_1385
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbe:Cbei_3300 ABC transporter related.
 
 
  
0.466
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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