Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_2279PFAM: CheC domain protein; KEGG: cth:Cthe_0126 CheC-like protein. (154 aa)    
Predicted Functional Partners:
Ccel_2037
PFAM: response regulator receiver; KEGG: cth:Cthe_0479 response regulator receiver protein.
 
 
 0.979
Ccel_2316
PFAM: response regulator receiver; KEGG: ckl:CKL_1122 hypothetical protein.
  
 
 0.909
Ccel_1794
PFAM: response regulator receiver; KEGG: cth:Cthe_1318 response regulator receiver protein.
  
 
 0.906
Ccel_0028
PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_2410 hypothetical protein.
  
     0.740
Ccel_2021
PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 hypothetical protein.
  
     0.730
Ccel_1682
KEGG: cth:Cthe_1061 hypothetical protein.
 
     0.722
Ccel_2278
tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.600
Ccel_2045
PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein.
 
     0.525
Ccel_2038
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 flagellar motor switch protein.
 
  
 0.515
Ccel_2039
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cth:Cthe_0477 flagellar motor switch protein FliM.
 
   
 0.483
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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