STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2299PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: cbh:CLC_1773 sporulation domain-containing protein. (390 aa)    
Predicted Functional Partners:
Ccel_2300
KEGG: cpy:Cphy_0092 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; SMART: PAS domain containing protein.
 
     0.953
Ccel_2301
KEGG: cbl:CLK_1211 hypothetical protein.
 
     0.905
Ccel_2298
PFAM: transposase IS605 OrfB; KEGG: tma:TM1831 transposase, putative.
 
     0.783
Ccel_2063
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
   
  
 0.596
Ccel_2234
Ferredoxin; KEGG: cth:Cthe_0340 ferredoxin.
  
     0.556
Ccel_2235
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: cth:Cthe_0339 histidine kinase.
  
     0.411
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.