Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Ccel_2319PFAM: glycoside hydrolase family 10; S-layer domain protein; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: swo:Swol_0293 hypothetical protein. (1495 aa)    
Predicted Functional Partners:
Ccel_0141
PFAM: glycoside hydrolase family 67; glycosyl hydrolase 67 C-teriminal domain protein; Glycosyl hydrolase 67 middle domain protein; KEGG: gtn:GTNG_1770 alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.743
Ccel_0153
PFAM: glycoside hydrolase family 10; KEGG: csc:Csac_0204 glycoside hydrolase family protein.
  
     0.741
Ccel_1257
PFAM: glycoside hydrolase family 43; KEGG: fjo:Fjoh_3875 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.698
Ccel_1866
PFAM: glycoside hydrolase family 11; KEGG: cpy:Cphy_2105 endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.692
Ccel_3397
PFAM: S-layer domain protein; KEGG: cth:Cthe_2348 Ig-related protein.
  
     0.675
Ccel_0750
PFAM: glycoside hydrolase family 11; cellulosome protein dockerin type I; KEGG: cth:Cthe_2972 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.662
Ccel_0150
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH2111 hypothetical protein.
  
     0.660
Ccel_2614
PFAM: glycoside hydrolase family 43; KEGG: cbe:Cbei_4973 alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.617
Ccel_1020
KEGG: cpy:Cphy_0874 hypothetical protein.
  
   
 0.601
Ccel_0275
PFAM: S-layer domain protein; KEGG: drm:Dred_2357 S-layer domain-containing protein.
  
   
 0.599
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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