Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2323PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbk:CLL_A1407 bacitracin transport ATP-binding protein BcrA. (307 aa)    
Predicted Functional Partners:
Ccel_2321
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cbk:CLL_A1409 two component sensor kinase.
 
     0.917
Ccel_2322
KEGG: cbk:CLL_A1408 hypothetical protein.
       0.781
Ccel_2324
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbk:CLL_A1406 regulatory protein VanR.
 
  
 0.647
Ccel_3261
PFAM: ABC-2 type transporter; KEGG: cdf:CD1603 ABC transporter, permease protein.
 
  
 0.517
Ccel_1152
PFAM: protein of unknown function DUF214; KEGG: cbh:CLC_0840 putative ABC transporter, permease protein.
  
  
 0.494
Ccel_2158
KEGG: tle:Tlet_1861 putative ABC-2 type transport system permease protein.
  
 
 0.486
Ccel_2326
PFAM: phosphopantetheine-binding; KEGG: mar:MAE_56580 peptide synthetase.
 
     0.483
Ccel_0558
PFAM: protein of unknown function DUF214; KEGG: ckl:CKL_3391 hypothetical protein.
  
  
 0.475
Ccel_2325
TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; Glycosyltransferase 28 domain; KEGG: cbe:Cbei_1729 glycosyltransferase, MGT family.
 
     0.463
Ccel_1160
KEGG: hmo:HM1_1647 hypothetical protein.
  
 
 0.433
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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