Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2341KEGG: cbf:CLI_2416 hypothetical protein. (92 aa)    
Predicted Functional Partners:
Ccel_2340
KEGG: paa:Paes_2303 hypothetical protein.
  
    0.764
Ccel_1095
KEGG: bcs:BCAN_A0517 hypothetical protein.
  
    0.655
Ccel_1396
KEGG: ote:Oter_1909 hypothetical protein.
  
     0.638
Ccel_1519
KEGG: predicted protein.
  
    0.638
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
    0.637
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
    0.619
Ccel_0804
KEGG: cth:Cthe_2732 hypothetical protein.
  
     0.618
Ccel_2544
PFAM: flavodoxin/nitric oxide synthase; KEGG: rci:RCIX1229 flavodoxin.
  
     0.594
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
  
   
 0.587
Ccel_0736
PFAM: cellulosome protein dockerin type I; KEGG: cac:CAC0918 non-processive endoglucanase.
  
     0.585
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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