Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2343PFAM: beta-lactamase; KEGG: bcy:Bcer98_1900 beta-lactamase. (309 aa)    
Predicted Functional Partners:
Ccel_2342
PFAM: ABC transporter related; KEGG: cdf:CD3195 putative excinuclease ABC subunit A.
       0.780
Ccel_2344
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: cpy:Cphy_0123 FMN-dependent alpha-hydroxy acid dehydrogenase.
       0.645
Ccel_0973
PFAM: beta-lactamase; KEGG: bwe:BcerKBAB4_1783 cyclic peptide transporter.
  
   
 0.547
Ccel_2659
PFAM: beta-lactamase; KEGG: cbl:CLK_3450 putative beta-lactamase.
  
   
 0.532
Ccel_2341
KEGG: cbf:CLI_2416 hypothetical protein.
       0.505
Ccel_2672
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cdf:CD1725 AraC family transcription regulator.
  
     0.477
Ccel_2654
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: vvy:VVA1253 hypothetical protein.
 
   
 0.462
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
  
  
 0.424
Ccel_0721
PFAM: peptidase M19 renal dipeptidase; KEGG: cth:Cthe_0756 thermostable dipeptidase.
 
    0.421
Ccel_2670
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cdf:CD1758 radical SAM-superfamily protein.
  
     0.415
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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