Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ccel_2345KEGG: cpy:Cphy_2165 hypothetical protein. (163 aa)    
Predicted Functional Partners:
Ccel_3377
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cpy:Cphy_2411 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.651
Ccel_1116
KEGG: aoe:Clos_0885 hypothetical protein.
  
     0.633
Ccel_2014
KEGG: cpy:Cphy_2209 hypothetical protein.
  
     0.603
Ccel_2651
KEGG: cpy:Cphy_3139 hypothetical protein.
  
     0.561
Ccel_2956
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: cbk:CLL_A0946 phage major capsid protein, HK97 family.
  
     0.545
Ccel_1301
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: hmo:HM1_2921 hypothetical protein.
  
     0.538
Ccel_1212
PFAM: aminoglycoside phosphotransferase; KEGG: cac:CAC2572 aminoglycoside phosphotransferase.
  
     0.513
Ccel_2644
TIGRFAM: cell wall/surface repeat protein; PFAM: S-layer domain protein; Listeria/Bacterioides repeat protein; KEGG: lin:lin2724 internalin-like protein.
  
     0.466
Ccel_3423
KEGG: amt:Amet_1004 superfamily I DNA helicase.
  
     0.443
Ccel_1662
PFAM: major facilitator superfamily MFS_1; KEGG: cbe:Cbei_3888 major facilitator superfamily MFS_1.
  
     0.440
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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