Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2353PFAM: Radical SAM domain protein; KEGG: tme:Tmel_0507 radical SAM domain-containing protein. (327 aa)    
Predicted Functional Partners:
Ccel_2351
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cpy:Cphy_3574 radical SAM domain-containing protein.
 
  
 0.784
Ccel_2352
PFAM: NUDIX hydrolase; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mgi:Mflv_5060 radical SAM domain-containing protein.
       0.773
Ccel_2354
Glycosyltransferase 36; PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: dth:DICTH_0484 N,N'-diacetylchitobiose phosphorylase.
       0.618
Ccel_2348
PFAM: protein of unknown function DUF990; KEGG: cau:Caur_0437 hypothetical protein.
       0.503
Ccel_2349
PFAM: protein of unknown function DUF990; KEGG: fnu:FN0879 ABC transporter integral membrane protein.
       0.503
Ccel_2350
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rba:RB5056 ABC transporter, ATP-binding protein.
       0.503
Ccel_2355
PFAM: protein of unknown function DUF214; KEGG: lmf:LMOf2365_1233 ABC transporter, permease protein.
       0.408
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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