Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ccel_2355PFAM: protein of unknown function DUF214; KEGG: lmf:LMOf2365_1233 ABC transporter, permease protein. (1016 aa)    
Predicted Functional Partners:
Ccel_2356
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_2590 ABC transporter related.
 
 
 0.979
Ccel_0557
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_3392 hypothetical protein.
 
 
 0.674
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
  
 
 0.673
Ccel_1151
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbl:CLK_0187 ABC transporter, ATP-binding protein.
 
 
 0.654
scpA
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.624
Ccel_0466
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1763 ABC transporter related protein.
  
 
 0.595
Ccel_0855
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_2430 ABC transporter, ATP-binding protein.
  
 
 0.595
Ccel_2703
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bat:BAS3158 ABC transporter, ATP-binding protein.
  
 
 0.595
Ccel_2352
PFAM: NUDIX hydrolase; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mgi:Mflv_5060 radical SAM domain-containing protein.
       0.559
Ccel_2357
PFAM: regulatory protein TetR; KEGG: bha:BH0719 TetR/AcrR family transcriptional regulator.
  
  
 0.557
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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