Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2356PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_2590 ABC transporter related. (233 aa)    
Predicted Functional Partners:
Ccel_2355
PFAM: protein of unknown function DUF214; KEGG: lmf:LMOf2365_1233 ABC transporter, permease protein.
 
 
 0.979
Ccel_0469
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1761 hypothetical protein.
 
 0.963
Ccel_0558
PFAM: protein of unknown function DUF214; KEGG: ckl:CKL_3391 hypothetical protein.
 
 
 0.673
Ccel_1152
PFAM: protein of unknown function DUF214; KEGG: cbh:CLC_0840 putative ABC transporter, permease protein.
 
 
 0.672
Ccel_1430
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: efa:EF1593 ABC transporter, ATP-binding/permease protein.
 
    
0.656
Ccel_1429
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: lin:lin0156 hypothetical protein.
 
    
0.623
Ccel_2681
KEGG: amt:Amet_4173 hypothetical protein.
  
 
 0.587
Ccel_0856
PFAM: protein of unknown function DUF214; KEGG: afw:Anae109_0497 hypothetical protein.
  
 
 0.561
Ccel_0857
PFAM: protein of unknown function DUF214; KEGG: ade:Adeh_3937 hypothetical protein.
  
 
 0.561
Ccel_2357
PFAM: regulatory protein TetR; KEGG: bha:BH0719 TetR/AcrR family transcriptional regulator.
   
 
 0.555
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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