STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2364PFAM: S-layer domain protein; Ig domain protein group 2 domain protein; KEGG: drm:Dred_2357 S-layer domain-containing protein. (1421 aa)    
Predicted Functional Partners:
Ccel_2633
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.763
Ccel_3132
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.761
Ccel_1126
PFAM: copper amine oxidase domain protein; KEGG: nmr:Nmar_0998 hypothetical protein.
 
     0.750
Ccel_2334
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_1909 copper amine oxidase-like protein.
 
  
 0.643
Ccel_3397
PFAM: S-layer domain protein; KEGG: cth:Cthe_2348 Ig-related protein.
  
   
 0.617
Ccel_0289
PFAM: S-layer domain protein; KEGG: cth:Cthe_1931 S-layer-like domain-containing protein.
  
     0.594
Ccel_1146
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0744 copper amine oxidase-like protein.
  
   0.582
Ccel_2883
PFAM: glycosyl transferase group 1; polysaccharide pyruvyl transferase; KEGG: cth:Cthe_2702 polysaccharide pyruvyl transferase.
  
   
 0.536
Ccel_3406
KEGG: cth:Cthe_2182 Ig-like, group 2.
  
     0.511
Ccel_0901
PFAM: copper amine oxidase domain protein; KEGG: aoe:Clos_2285 copper amine oxidase domain-containing protein.
  
     0.505
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.