Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_2369KEGG: cbf:CLI_3233 hypothetical protein. (376 aa)    
Predicted Functional Partners:
Ccel_2370
PFAM: Radical SAM domain protein; KEGG: cbf:CLI_3234 radical SAM domain-containing protein.
 
     0.934
Ccel_2600
PFAM: Radical SAM domain protein; KEGG: cbf:CLI_3234 radical SAM domain-containing protein.
 
     0.749
Ccel_0328
PFAM: Radical SAM domain protein; KEGG: cpy:Cphy_2677 radical SAM domain-containing protein.
 
     0.700
Ccel_3447
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: cbf:CLI_3230 S8/S53 family peptidase.
 
     0.648
Ccel_2592
KEGG: swo:Swol_0580 hypothetical protein.
  
     0.564
Ccel_2368
Hypothetical protein.
       0.531
Ccel_0718
KEGG: cth:Cthe_0760 hypothetical protein.
  
     0.486
Ccel_0279
PFAM: Protein of unknown function DUF1779; KEGG: cth:Cthe_2614 hypothetical protein.
  
     0.464
Ccel_1519
KEGG: predicted protein.
  
     0.464
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.442
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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