Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2383PFAM: condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: ckl:CKL_1731 polyketide synthase. (2006 aa)    
Predicted Functional Partners:
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
 
 
0.948
Ccel_2384
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: ckl:CKL_1733 hybrid nonribosomal peptide synthetase/polyketide synthase.
 
 
0.942
Ccel_0671
PFAM: 4'-phosphopantetheinyl transferase; KEGG: ckl:CKL_1736 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily.
 
 0.933
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
 
 
0.929
Ccel_2389
KEGG: bwe:BcerKBAB4_1783 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: beta-lactamase; ABC transporter related; SMART: AAA ATPase.
 
  
 0.916
Ccel_0854
PfaD family protein; TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PfaD family protein; PFAM: 2-nitropropane dioxygenase NPD; Acyl transferase; KEGG: gur:Gura_3105 malonyl CoA-acyl carrier protein transacylase.
 
  
 0.896
Ccel_0672
PFAM: Thioesterase; KEGG: bcz:BCZK1713 thioesterase.
 
  
 0.863
Ccel_2326
PFAM: phosphopantetheine-binding; KEGG: mar:MAE_56580 peptide synthetase.
 
 
 0.863
Ccel_2512
PFAM: Thioesterase; KEGG: bcz:BCZK1713 thioesterase.
 
  
 0.863
Ccel_0852
PFAM: Acyl transferase; KEGG: bay:RBAM_016920 BaeD.
 
  
 0.836
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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