STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2387PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tle:Tlet_1717 radical SAM domain-containing protein. (545 aa)    
Predicted Functional Partners:
Ccel_2386
Amino acid adenylation domain protein; KEGG: ckl:CKL_1733 hybrid nonribosomal peptide synthetase/polyketide synthase; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; cobalamin B12-binding domain protein; phosphopantetheine-binding; SMART: Elongator protein 3/MiaB/NifB; Belongs to the ATP-dependent AMP-binding enzyme family.
      
0.658
Ccel_2384
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: ckl:CKL_1733 hybrid nonribosomal peptide synthetase/polyketide synthase.
  
    0.651
Ccel_2385
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: ckl:CKL_2355 hybrid nonribosomal peptide synthetase/polyketide synthase.
  
    0.636
Ccel_2383
PFAM: condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: ckl:CKL_1731 polyketide synthase.
  
    0.606
Ccel_2379
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sus:Acid_0877 radical SAM domain-containing protein.
 
    
0.594
Ccel_2388
PFAM: pyruvate phosphate dikinase PEP/pyruvate-binding; PEP-utilising protein mobile region; KEGG: bay:RBAM_032330 YvkC.
       0.592
Ccel_2389
KEGG: bwe:BcerKBAB4_1783 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: beta-lactamase; ABC transporter related; SMART: AAA ATPase.
       0.532
Ccel_2382
KEGG: cbh:CLC_2462 hypothetical protein.
       0.525
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
  
    0.494
Ccel_2390
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: bwe:BcerKBAB4_1782 amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.473
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.