STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2395PFAM: lipolytic protein G-D-S-L family; cellulosome protein dockerin type I; KEGG: gvi:gll2764 unknown protein. (311 aa)    
Predicted Functional Partners:
Ccel_1866
PFAM: glycoside hydrolase family 11; KEGG: cpy:Cphy_2105 endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.759
Ccel_0732
PFAM: glycoside hydrolase family 9; cellulosome protein dockerin type I; Carbohydrate-binding CenC domain protein; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: cac:CAC0561 cellulase CelE-like protein; Belongs to the glycosyl hydrolase 9 (cellulase E) family.
  
 
 0.729
Ccel_0740
PFAM: glycoside hydrolase family 5; cellulosome protein dockerin type I; KEGG: cth:Cthe_2872 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
   
 0.685
celCCF
Glycoside hydrolase family 48; Probable endoglucanase involved in the degradation of cellulose or related beta-glucans; Belongs to the glycosyl hydrolase 48 (cellulase L) family.
  
 
 0.672
Ccel_2823
TIGRFAM: phage minor structural protein; KEGG: hmo:HM1_2971 phage minor structural protein, N-terminal.
  
   0.617
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
  
 
   0.592
man26A
PFAM: glycoside hydrolase family 26; cellulosome protein dockerin type I; KEGG: cth:Cthe_2811 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 26 family.
  
   
 0.558
Ccel_1972
PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_0661 ricin B lectin; Belongs to the glycosyl hydrolase 43 family.
  
     0.548
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
 
 0.515
Ccel_0987
KEGG: hau:Haur_3969 hypothetical protein.
  
     0.513
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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