STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2406KEGG: cno:NT01CX_1598 hypothetical protein. (466 aa)    
Predicted Functional Partners:
Ccel_2407
PFAM: Fimbrial assembly family protein; KEGG: dth:DICTH_0890 fimbrial assembly membrane protein, putative.
  
 
 0.969
Ccel_2409
TIGRFAM: type IV pilus assembly protein PilM; KEGG: cth:Cthe_0656 type IV pilus assembly protein PilM.
 
 
 0.886
Ccel_2412
PFAM: type II secretion system protein; KEGG: amt:Amet_3480 type II secretion system protein.
   
 
 0.825
Ccel_2405
Hypothetical protein; KEGG: cbt:CLH_3049 prokaryotic N-methylation motif domain protein.
     
 0.801
Ccel_2414
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 pili biogenesis protein PilB-like ATPase.
  
 
 0.794
Ccel_2404
KEGG: cno:NT01CX_1600 hypothetical protein.
       0.774
Ccel_1655
PFAM: cellulosome protein dockerin type I; KEGG: sus:Acid_0258 hypothetical protein.
  
     0.702
Ccel_2403
PA14 domain protein; PFAM: Fibronectin type III domain protein; PA14 domain protein; KEGG: cth:Cthe_0316 PA14.
       0.677
Ccel_2411
KEGG: tte:TTE1265 hypothetical protein.
 
  
 0.664
Ccel_0142
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; histidine kinase HAMP region domain protein; KEGG: cpy:Cphy_1915 AraC family transcriptional regulator.
  
     0.612
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.