Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2408Hypothetical protein. (174 aa)    
Predicted Functional Partners:
Ccel_2407
PFAM: Fimbrial assembly family protein; KEGG: dth:DICTH_0890 fimbrial assembly membrane protein, putative.
       0.675
Ccel_2409
TIGRFAM: type IV pilus assembly protein PilM; KEGG: cth:Cthe_0656 type IV pilus assembly protein PilM.
       0.648
Ccel_2410
PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: cth:Cthe_0852 Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A.
       0.572
Ccel_2411
KEGG: tte:TTE1265 hypothetical protein.
       0.572
Ccel_2406
KEGG: cno:NT01CX_1598 hypothetical protein.
       0.525
Ccel_2404
KEGG: cno:NT01CX_1600 hypothetical protein.
       0.505
Ccel_2405
Hypothetical protein; KEGG: cbt:CLH_3049 prokaryotic N-methylation motif domain protein.
       0.505
Ccel_2412
PFAM: type II secretion system protein; KEGG: amt:Amet_3480 type II secretion system protein.
       0.488
Ccel_2403
PA14 domain protein; PFAM: Fibronectin type III domain protein; PA14 domain protein; KEGG: cth:Cthe_0316 PA14.
       0.461
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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