STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2443PFAM: major facilitator superfamily MFS_1; KEGG: mem:Memar_2034 major facilitator transporter. (457 aa)    
Predicted Functional Partners:
Ccel_0877
PFAM: major facilitator superfamily MFS_1; KEGG: csc:Csac_1170 major facilitator transporter.
  
     0.605
Ccel_0146
PFAM: polysaccharide deacetylase; KEGG: pmo:Pmob_0232 polysaccharide deacetylase.
  
     0.498
Ccel_1974
KEGG: csc:Csac_1811 hypothetical protein.
  
     0.451
Ccel_2444
PFAM: sodium/hydrogen exchanger; KEGG: ckl:CKL_0508 NapA.
       0.450
Ccel_1035
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: stl:stu1532 glyoxalase I/lactoylglutathione lyase.
  
    0.410
Ccel_1500
KEGG: mag:amb1882 hypothetical protein.
  
     0.409
Ccel_3399
KEGG: cth:Cthe_2348 Ig-related protein.
  
     0.403
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
  
     0.400
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.