Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2449TIGRFAM: conserved hypothetical protein; KEGG: cau:Caur_2739 hypothetical protein. (260 aa)    
Predicted Functional Partners:
Ccel_0039
PFAM: S-layer domain protein; KEGG: cth:Cthe_2877 S-layer-like domain-containing protein.
  
     0.649
Ccel_0275
PFAM: S-layer domain protein; KEGG: drm:Dred_2357 S-layer domain-containing protein.
  
     0.646
Ccel_1937
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0243 copper amine oxidase-like protein.
  
     0.631
Ccel_1376
PFAM: S-layer domain protein; copper amine oxidase domain protein; KEGG: lsp:Bsph_1041 putative S-layer protein/N-acetylmuramoyl-L-alanine amidase.
  
     0.614
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.589
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
     0.583
Ccel_0390
Hypothetical protein; KEGG: csc:Csac_0946 TPR repeat-containing protein.
  
   
 0.577
Ccel_1519
KEGG: predicted protein.
  
     0.570
Ccel_2442
PFAM: cellulosome protein dockerin type I; KEGG: gvi:gll3705 unknown protein.
  
     0.560
Ccel_0517
KEGG: cbh:CLC_1710 hypothetical protein.
  
     0.540
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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