Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2463PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein. (604 aa)    
Predicted Functional Partners:
Ccel_2464
PFAM: Pyrrolo-quinoline quinone; KEGG: cth:Cthe_0739 hypothetical protein.
 
    
0.713
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
 
    0.678
Ccel_3398
KEGG: cth:Cthe_2348 Ig-related protein.
 
     0.676
Ccel_3399
KEGG: cth:Cthe_2348 Ig-related protein.
 
     0.668
Ccel_0042
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cth:Cthe_2419 DNA replication protein DnaD.
  
     0.658
Ccel_0595
KEGG: cth:Cthe_0793 hypothetical protein.
 
   
 0.657
Ccel_3397
PFAM: S-layer domain protein; KEGG: cth:Cthe_2348 Ig-related protein.
 
     0.656
Ccel_3432
KEGG: cth:Cthe_2520 hypothetical protein.
  
     0.631
Ccel_0277
PFAM: Fibronectin type III domain protein; KEGG: cth:Cthe_2612 fibronectin, type III.
  
     0.626
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
  
   
 0.622
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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