Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2476PFAM: penicillin-binding protein transpeptidase; KEGG: cac:CAC0506 penicillin-binding protein. (471 aa)    
Predicted Functional Partners:
Ccel_2477
PFAM: cell cycle protein; KEGG: cac:CAC0505 cell division membrane protein; Belongs to the SEDS family.
 
 0.996
Ccel_0474
TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: cth:Cthe_0983 cell cycle protein; Belongs to the SEDS family.
 
 0.961
Ccel_2876
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cth:Cthe_1760 1A family penicillin-binding protein.
 
 
0.958
Ccel_2560
TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: cth:Cthe_0091 peptidoglycan glycosyltransferase.
  
  
0.928
Ccel_0478
PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cth:Cthe_0979 peptidoglycan glycosyltransferase.
 
  
0.923
Ccel_1486
PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: cth:Cthe_1011 peptidoglycan glycosyltransferase.
  
  
 
0.919
Ccel_1749
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cth:Cthe_0679 serine-type D-Ala-D-Ala carboxypeptidase.
  
 
 0.919
Ccel_0487
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cth:Cthe_3179 serine-type D-Ala-D-Ala carboxypeptidase.
  
 
 0.915
Ccel_0520
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: cth:Cthe_1171 serine-type D-Ala-D-Ala carboxypeptidase.
  
 
 0.915
Ccel_1370
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cth:Cthe_1231 serine-type D-Ala-D-Ala carboxypeptidase.
  
 
 0.915
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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