Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2480TIGRFAM: stage V sporulation protein B; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ctc:CTC00988 stage V sporulation protein B. (501 aa)    
Predicted Functional Partners:
Ccel_2212
KEGG: ckl:CKL_2814 hypothetical protein.
  
     0.614
Ccel_2481
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sth:STH2367 phosphoglycolate phosphatase.
       0.592
Ccel_0641
KEGG: cpy:Cphy_1776 hypothetical protein.
  
     0.574
Ccel_2213
KEGG: ckl:CKL_2815 hypothetical protein.
 
     0.506
Ccel_2477
PFAM: cell cycle protein; KEGG: cac:CAC0505 cell division membrane protein; Belongs to the SEDS family.
 
   
 0.501
Ccel_1150
Plasmid maintenance system antidote protein, XRE family; PFAM: helix-turn-helix domain protein; KEGG: cth:Cthe_0049 XRE family transcriptional regulator.
  
     0.498
Ccel_2502
KEGG: cbe:Cbei_0745 hypothetical protein.
  
    0.493
Ccel_0705
KEGG: pdi:BDI_2301 pantothenate kinase.
  
     0.490
Ccel_2479
PFAM: protein of unknown function DUF1294; KEGG: cth:Cthe_0204 hypothetical protein.
       0.486
Ccel_2240
PFAM: protein of unknown function DUF965; KEGG: cth:Cthe_0151 hypothetical protein; Belongs to the UPF0297 family.
  
     0.471
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.