Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ccel_2489PFAM: S-layer domain protein; Na-Ca exchanger/integrin-beta4; KEGG: cyt:cce_5280 hypothetical protein. (1661 aa)    
Predicted Functional Partners:
Ccel_1126
PFAM: copper amine oxidase domain protein; KEGG: nmr:Nmar_0998 hypothetical protein.
 
  
 0.769
Ccel_2490
Hypothetical protein; KEGG: gur:Gura_0755 coagulation factor 5/8 type domain-containing protein.
 
  
 0.656
Ccel_2334
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_1909 copper amine oxidase-like protein.
 
  
 0.622
Ccel_1146
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0744 copper amine oxidase-like protein.
  
   0.559
Ccel_0289
PFAM: S-layer domain protein; KEGG: cth:Cthe_1931 S-layer-like domain-containing protein.
  
   
 0.542
Ccel_2491
PFAM: Tail Collar domain protein; KEGG: pna:Pnap_4722 phage tail collar domain protein.
 
     0.489
Ccel_2923
KEGG: aoe:Clos_2272 hypothetical protein.
  
     0.455
Ccel_2883
PFAM: glycosyl transferase group 1; polysaccharide pyruvyl transferase; KEGG: cth:Cthe_2702 polysaccharide pyruvyl transferase.
  
  
 0.437
Ccel_1717
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cth:Cthe_0727 cell envelope-related transcriptional attenuator.
  
     0.425
Ccel_0275
PFAM: S-layer domain protein; KEGG: drm:Dred_2357 S-layer domain-containing protein.
  
     0.416
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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