Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Ccel_2491PFAM: Tail Collar domain protein; KEGG: pna:Pnap_4722 phage tail collar domain protein. (80 aa)    
Predicted Functional Partners:
Ccel_1106
PFAM: Tail Collar domain protein; KEGG: bra:BRADO4738 phage-like protein.
  
     0.774
Ccel_2490
Hypothetical protein; KEGG: gur:Gura_0755 coagulation factor 5/8 type domain-containing protein.
 
     0.707
Ccel_2492
PFAM: Tail Collar domain protein; KEGG: gur:Gura_0754 phage tail collar domain-containing protein.
 
    
0.587
Ccel_2489
PFAM: S-layer domain protein; Na-Ca exchanger/integrin-beta4; KEGG: cyt:cce_5280 hypothetical protein.
 
     0.489
Ccel_1105
PFAM: Tail Collar domain protein; KEGG: bra:BRADO4738 phage-like protein.
  
     0.469
Ccel_2493
PFAM: Tail Collar domain protein; KEGG: pna:Pnap_4722 phage tail collar domain protein.
 
    
0.453
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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