Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_2504KEGG: cbo:CBO0408 hypothetical protein. (309 aa)    
Predicted Functional Partners:
Ccel_2503
PFAM: aldo/keto reductase; KEGG: cth:Cthe_0236 aldo/keto reductase.
       0.568
Ccel_2311
PFAM: protein of unknown function DUF1540; KEGG: cth:Cthe_3071 hypothetical protein.
  
     0.479
Ccel_2505
Diguanylate cyclase and metal dependent phosphohydrolase; KEGG: cbe:Cbei_4617 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
       0.477
Ccel_2230
KEGG: cpy:Cphy_0280 hypothetical protein.
  
     0.435
Ccel_2229
KEGG: cbe:Cbei_4038 hypothetical protein.
  
     0.426
Ccel_2916
PFAM: GCN5-related N-acetyltransferase; KEGG: cth:Cthe_1870 GCN5-related N-acetyltransferase.
  
     0.417
Ccel_2448
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: nth:Nther_0727 FAD dependent oxidoreductase.
 
     0.411
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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